species:   Rhsol
pid:       PID0491
parent:    Rhi-milR-112
paralog:   
locus:     KB317708.1:469343-469428
matures:   ['UAUGGCCGUGGAUACUUUGCAA', 'GUGACUUGUAUCCAUCCCAUUAAGC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317708.1:469343-469428

27646 out of bounds
24873 alignments
98 proper strand
80 stranded perfect matches

        *************************                 ****************************        
UUCGAAGUCCUAUGGCCGUGGAUACUUUGCAAUCCCAAAGUGGGUAUAUAUGUGUGACUUGUAUCCAUCCCAUUAAGCACUUGGAC
.((.((((.((((((..((((((((.(((((..((((...))))........)))))...)))))))).))))..)).)))).)).
----------UAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=22 a=8 c
-----------------------------------------------------GUGACUUGUAUCCAUCCCAUUAAGC-------- l=25 a=0 c*
----------UAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=38 ma
----------------------------------------------------UGUGACUUGUAUCCAUCCCAUUAAGC-------- l=26 a=0 ma*

UUuGAAGUCCUAUGGCCGUGG----------------------------------------------------------------- l=21 a=1 
-------UCCUAUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=23 a=4 
-------UCCUAUGGCCGUGGAUACUUUGu-------------------------------------------------------- l=23 a=1 
---------CUAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=23 a=1 
---------uUAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=24 a=1 
----------UAUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=20 a=13 
----------UAUGGCCGUGGAUACUUUGCA------------------------------------------------------- l=21 a=4 
----------UAUGGCCGUGGAUACUUUGCAA------------------------------------------------------ l=22 a=8 (c)
----------UAUGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=38 (ma)
----------UAUGGCuGUGGAUACUUUGCAAU----------------------------------------------------- l=23 a=1 
----------UAUGGCCGUGGAUACUUUGCAAUC---------------------------------------------------- l=24 a=4 
----------UAUGGCCGUGGAUACUUUGCAAUa---------------------------------------------------- l=24 a=1 
-----------AUGGCCGUGGAUACUUUGC-------------------------------------------------------- l=19 a=2 
------------UGGCuGUGGAUACUUUGCAAU----------------------------------------------------- l=21 a=2 
------------UGGCCGUGGAUACUUUGCAAU----------------------------------------------------- l=21 a=3 
------------UGGCCGUGGAUACUUUGCAAUC---------------------------------------------------- l=22 a=1 
------------UGGCCGUGGAUACUUUGCAAUCu--------------------------------------------------- l=23 a=5 
------------UGGCCGUGGAUACUUUGCAAUCg--------------------------------------------------- l=23 a=1 
------------UGGCCGUGGAUACUUUGCAAUCa--------------------------------------------------- l=23 a=3 
------------------UGGAUACUUUGCAAUCCCAgAGUGG------------------------------------------- l=25 a=1 
-----------------------------------------------AUAUcUGUGACUUGUAUCCAUCCC--------------- l=24 a=1 
------------------------------------------------------UGACUUGUAUCCAUCCCAUUAAGC-------- l=24 a=2 

mb-01111
ax-1001011
ku-01
ss-111111001100
fn-101
